Tools

Genome Sequence Alignment

• TALCO – Tiling genome sequence Alignment using Convergence of traceback pointers

Phylogenetic Inference

• ROADIES – Reference-free Orthology-free Alignment-free Discordance aware Estimation of Species tree

Real-time Phylogenetics for Pandemic and Outbreak Analysis

• RIVET – SARS-CoV-2 RecombInation Viewer and Tracker
• UShER – Ultrafast Sample Placement on Existing Trees