utils.h File Reference

#include "params.h"
#include <string>

Go to the source code of this file.

Namespaces
	Utils
	Utils::Array
	Utils::Init
	Utils::Matrix
	Utils::Kernel

Functions
template<typename T , int N>
void	Utils::Array::ShiftLeft (T(&arr)[N], T new_data)
template<typename T , int N>
void	Utils::Array::ShiftRight (T(&arr)[N], T new_data)
template<typename T , int M, int N, int LEN>
void	Utils::Array::Copy (T(&src)[M], T(&dst)[N], idx_t len, T default_num)
	Copy length LEN of data from src to dst. If more than len, fill the rest with default_num. We need to use fixed length array rather than a pointer is because HLS is not pointer friendly. More...
template<typename T , int N>
void	Utils::Array::Copy (T(&src)[N], T(&dst)[N])
template<typename T >
void	Utils::Array::Switch (T **arr1, T **arr2)
template<typename T , int LEN>
void	Utils::Array::Linspace (T(&arr)[LEN], T start, T step)
template<typename T , int N>
void	Utils::Init::ArrSet (T(&arr)[N], T val)
template<typename T , int N>
void	Utils::Init::ArrSet (T(&arr)[N], idx_t layer, T val)
template<typename T , int LAY, int N>
void	Utils::Init::Linspace (hls::vector< T, LAY >(&arr)[N], idx_t starting_idx, idx_t layer, type_t start, type_t step)
template<typename T >
void	Utils::Init::Linspace (T &arr, idx_t starting_idx, idx_t layer, type_t start, type_t step, int len)
template<typename PACK , typename IDX_T , int LEN>
void	Utils::Init::DetermineGlobalTracebackCoordinate (PACK(&local_maximum)[LEN], IDX_T qry_len, IDX_T ref_len)
	ONLY FOR RECTANGULAR KERNEL Global alignment start the traceback at the bottom right corner of the score matrix. Given the query and reference length, the traceback physical address can be determined before the score matri iteration. Thus, this function takes the ScorePack array, according to the query and reference legnth, to set the traceback starting PE's ScorePack with INF and corresponding coordinate. More...
template<typename PACK , typename IDX_T , int PE_NUM_, int BANDWIDTH_, int TB_CHUNK_WIDTH_>
void	Utils::Init::DetermineFixedBandingGlobalTracebackCoordinate (PACK(&max)[PE_NUM_], IDX_T qry_len, IDX_T ref_len)
template<typename T , int LEN, int BLK>
void	Utils::Kernel::top_level_radin_line (T src[BLK], T dst[BLK][LEN], idx_t i)
template<typename T , int LEN, int BLK>
void	Utils::Kernel::top_level_readin (T ddr_in[LEN][BLK], T internal[BLK][LEN])
template<typename T , int LEN, int BLK>
void	Utils::Kernel::top_level_writeout (T internal[BLK][LEN], T ddr_out[LEN][BLK])