Random Namespace Reference

Functions
template<int N>
string	Sequence (char alphabet[N], int length)
template<typename T >
std::vector< T >	SequenceComplex (int length)
template<int WID>
std::vector< std::array< int, 5 > >	SequenceProfileAlignment (int len)
	A function that generates a random sequence in the format of the input of profile alignment. Each element of the output vector is an array of length 5. Each element in the array is the count of A, T, C, G, and _ in the column. The integers in the array should be non negative and sum up to WID. More...

Function Documentation

template<int N>

string Random::Sequence	(	char	alphabet[N],
		int	length
	)

template<typename T >

std::vector<T> Random::SequenceComplex

(

int

length

)

template<int WID>

std::vector<std::array<int, 5> > Random::SequenceProfileAlignment

(

int

len

)

A function that generates a random sequence in the format of the input of profile alignment. Each element of the output vector is an array of length 5. Each element in the array is the count of A, T, C, G, and _ in the column. The integers in the array should be non negative and sum up to WID.

Template Parameters

WID	Number of sequences in the aligned sequences.

Returns

std::vector<std::array<int, N>>