ALIGN_TYPE::PE Namespace Reference

Functions
void	Compute (char_t local_query_val, char_t local_reference_val, score_vec_t up_prev, score_vec_t diag_prev, score_vec_t left_prev, const Penalties penalties, score_vec_t &write_score, tbp_t &write_traceback)
	The PE function defining the computation of the output score based on its upper, left, and diagonal dependencies. More...

Function Documentation

void ALIGN_TYPE::PE::Compute	(	char_t	local_query_val,
		char_t	local_reference_val,
		score_vec_t	up_prev,
		score_vec_t	diag_prev,
		score_vec_t	left_prev,
		const Penalties	penalties,
		score_vec_t &	write_score,
		tbp_t &	write_traceback
	)

The PE function defining the computation of the output score based on its upper, left, and diagonal dependencies.