components.h File Reference

#include "./components.h"
#include "./PE.h"
#include "./seq_align.h"
#include "./utils.h"

Go to the source code of this file.

Functions
void	DutExpandCompute (char_t local_query[PE_NUM], char_t local_reference[PE_NUM], hls::vector< type_t, N_LAYERS > wavefronts[2][PE_NUM], hls::vector< type_t, N_LAYERS > write_score_arr[PE_NUM], hls::vector< tbp_t, N_LAYERS > write_traceback_arr[PE_NUM])
void	DutExpandComputeBlock (input_char_block_t local_querys, input_char_block_t &local_references, score_block_t &up_prevs, score_block_t &diag_prevs, score_block_t &left_prevs, score_block_t &output_scores, tbp_block_t &output_tbp)
void	DutChunkComputeBlock (idx_t chunk_row_offset, input_char_block_t &query, char_t(&reference)[MAX_REFERENCE_LENGTH], score_block_t &init_col_scr, hls::vector< type_t, N_LAYERS >(&init_row_scr)[MAX_REFERENCE_LENGTH], int query_length, int reference_length, hls::vector< type_t, N_LAYERS >(&preserved_row_scr)[MAX_REFERENCE_LENGTH], ScorePack &max, tbp_chunk_block_t &chunk_tbp_out)
void	DutChunkComputeArr (idx_t chunk_row_offset, input_char_block_t &query, char_t(&reference)[MAX_REFERENCE_LENGTH], score_block_t &init_col_scr, hls::vector< type_t, N_LAYERS >(&init_row_scr)[MAX_REFERENCE_LENGTH], int query_length, int reference_length, hls::vector< type_t, N_LAYERS >(&preserved_row_scr)[MAX_REFERENCE_LENGTH], ScorePack &max, tbp_chunk_block_t &chunk_tbp_out)

Function Documentation

void DutChunkComputeArr	(	idx_t	chunk_row_offset,
		input_char_block_t &	query,
		char_t(&)	reference[MAX_REFERENCE_LENGTH],
		score_block_t &	init_col_scr,
		hls::vector< type_t, N_LAYERS >(&)	init_row_scr[MAX_REFERENCE_LENGTH],
		int	query_length,
		int	reference_length,
		hls::vector< type_t, N_LAYERS >(&)	preserved_row_scr[MAX_REFERENCE_LENGTH],
		ScorePack &	max,
		tbp_chunk_block_t &	chunk_tbp_out
	)

void DutChunkComputeBlock	(	idx_t	chunk_row_offset,
		input_char_block_t &	query,
		char_t(&)	reference[MAX_REFERENCE_LENGTH],
		score_block_t &	init_col_scr,
		hls::vector< type_t, N_LAYERS >(&)	init_row_scr[MAX_REFERENCE_LENGTH],
		int	query_length,
		int	reference_length,
		hls::vector< type_t, N_LAYERS >(&)	preserved_row_scr[MAX_REFERENCE_LENGTH],
		ScorePack &	max,
		tbp_chunk_block_t &	chunk_tbp_out
	)

void DutExpandCompute	(	char_t	local_query[PE_NUM],
		char_t	local_reference[PE_NUM],
		hls::vector< type_t, N_LAYERS >	wavefronts[2][PE_NUM],
		hls::vector< type_t, N_LAYERS >	write_score_arr[PE_NUM],
		hls::vector< tbp_t, N_LAYERS >	write_traceback_arr[PE_NUM]
	)

void DutExpandComputeBlock	(	input_char_block_t	local_querys,
		input_char_block_t &	local_references,
		score_block_t &	up_prevs,
		score_block_t &	diag_prevs,
		score_block_t &	left_prevs,
		score_block_t &	output_scores,
		tbp_block_t &	output_tbp
	)