Deprecated List

Member Align::UpdateDPMem (dp_mem_block_t &dp_mem, idx_t i, chunk_col_scores_inf_t &init_col_scr, score_vec_t(&init_row_scr)[MAX_REFERENCE_LENGTH])

This function is deprecated. Please see UpdateDPMemSep which is used in the kernel. .

Namespace ALIGN_TYPE::Helper

For kernel specific helper functions, please define them in a saparate file.

Member PE::PEUnroll (score_vec_t(&dp_mem)[PE_NUM+1][3], const input_char_block_t qry, const input_char_block_t ref, const Penalties penalties, tbp_vec_t &tbp)